Sr Bioinformaticist - Genomics

Rady Children's Hospital | San Diego, CA

Posted Date 6/25/2020
Description

JOB SUMMARY:

Computational-biologists/bioinformaticists in a large-scale "production" setting to deploy, maintain and evolve the bioinformatics framework for a high-throughput, ultra-rapid turnaround time wholegenome sequencing based clinical setting. Part of a team that'll build the infrastructure ground up using the latest and greatest of the technologies in infrastructure, data storage and analytics, with a strong focus on automation and integration. The environment is highly cross-functional, with a rich medical research heritage and multitude of collaborations with the biotech industry, academic institutions and federal programs.

MINMUM QUALIFICATIONS:

Bachelor's Degree

Experience analyzing next-gen sequencing data (Illumina whole genomes or exomes): BCL to annotated variants

Experience working with and understanding of open source NGS tools like bwa, samtools, vcftools, picard, GATK, Freebayes, ANNOVAR, VEP, etc.

Experience with unix/linux operating system and software development using any of Ruby, Python, Perl, Bash

Experience working with HPC scheduling systems such as Moab, TORQUE, LSF, OpenGrid Engine, etc.


PREFERRED QUALIFICATIONS:

Master's Degree

Experience in CNV and SV calling

Previous experience working in a CAP/CLIA environment

Previous experience with cloud-based development or analysis and performing benchmarking of bioinformatics tools

#SJ #AH

Share this job